rs225755173 SNP Detail

Summary

• ID
  rs225755173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128515238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCACTTT TGGCCTCATG
  TTCAGTAACA ACTCAGCCGG CATCTGACCA GGTGTTTTGG GGTGGCAATA CTGGGTAAGA
  TGGATCAACA GTGTTAAGTT TGGGTTGTGT AAGCTGAAAA TAAAAGTTAC CACAGGTTTA
  TGAGCCTCAG GTCCCACCTT TGTCAAAAGG GGACGGGGGT GGGGGTGGGA TTGCCATCTA
  Y
  ACCAGAAGAC ACACAGCGCC TAGCCTGACT GGGACAGGTG GGAAACTACA GTGAAATGCG
  AATGTGTATC CTGCTTTCCT CACCTTCCAC GAGGAGTTGA AAGTGTAAGG GCTTCAACTT
  CTCTCCACAC AGGCTTTGAA ATACTGGCTG TTGCTGTCCC TCATCTTTAA TGCAGTTTCT
  TAAACTTTCT GCTCCTGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351391119	MGP_WTSI_1_130484078	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225755173					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351391119	MGP_WTSI_1_130484078	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128515238 () rs orientation: forward

Symbol	Name	Function Class
Cxcr4	C-X-C motif chemokine receptor 4	698 bp downstream
Rr12058	regulatory region 12058	163 bp proximal
Rr28453	regulatory region 28453	1362 bp proximal
Tssr195	transcription start site region 195	560 bp upstream
Tssr13461	transcription start site region 13461	917 bp downstream
Tssr13462	transcription start site region 13462	1103 bp downstream
Tssr13463	transcription start site region 13463	1199 bp downstream
Tssr13464	transcription start site region 13464	1256 bp downstream
Tssr13465	transcription start site region 13465	1274 bp downstream
Tssr13466	transcription start site region 13466	1339 bp downstream
Tssr13467	transcription start site region 13467	1386 bp downstream
Tssr13468	transcription start site region 13468	1475 bp downstream
Tssr13469	transcription start site region 13469	1528 bp downstream
Tssr13470	transcription start site region 13470	1623 bp downstream
Tssr13471	transcription start site region 13471	1692 bp downstream
Tssr13472	transcription start site region 13472	1761 bp downstream
Tssr13473	transcription start site region 13473	1774 bp downstream
Tssr13474	transcription start site region 13474	1830 bp downstream
Tssr13475	transcription start site region 13475	1854 bp downstream
Tssr13476	transcription start site region 13476	1871 bp downstream
Tssr13477	transcription start site region 13477	1932 bp downstream