rs225769457 SNP Detail

Summary

• ID
  rs225769457
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45341498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCGGCCGG GCGAAAAACC
  CGTGTTCTTT TCCCCTTACA TGGCAGACTC TTAGCACATG TATGACATAT GCCTCTGTGC
  GACCATAGGC TCAAAAGCCT GCGAGTTACA GGGACCCCTC TCCTCTCTCG ACCAGAGGAG
  CAGGATCGAG ACTGTCTGGT CAGGGTCCCC ACCTCTGTCC CCTAAGCTTG TGGGACTAAG
  K
  GACCCCAGGC TGGGGCTGGA GTAGCACTCA CCACCCCGGG GTGTCGCGGG GGGCTGGGGC
  GGGGAAAGCG GCCGCCTAGC CCAGCCCCGT GGATGACAGG AGCCGGGGAG CCGAGGAGGG
  AGGAGCCGCC GCCGCGCGCT GGGCTGAGGA GCAGAGAGAG CGGGGCGCCG AGTGCGGGCG
  GCTGGGAGCG CGCTGAGCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322943358	CHEV_9_45238283	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225769457					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45341498 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4833428L15Rik	RIKEN cDNA 4833428L15 gene			within coordinates
Cpgi21692	CpG island 21692			within coordinates
Dscaml1	DS cell adhesion molecule like 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr383299	regulatory region 383299			within coordinates
Rr677921	regulatory region 677921			within coordinates
Rr677922	regulatory region 677922			1022 bp proximal
Rr677923	regulatory region 677923			1870 bp proximal
Tssr84800	transcription start site region 84800			116 bp upstream
Tssr84801	transcription start site region 84801			1129 bp upstream
Tssr84802	transcription start site region 84802			1157 bp upstream