rs225777358 SNP Detail

Summary

• ID
  rs225777358
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:45947552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAGCAACC CCAGAGCATC CCCAGAGGAG CACCCCAAGC
  ATCCTATCCC GAATCGGCGA GGGAACCACT CCCTGGATCT TGCTGGGGGC GGGGGGGTGG
  G
  GGTGTCAAAA GCATACCAGT GGGATAGAAA ATCAAAGGTT TCCGAGAGAT TAGGGTAGGG
  TGGTTTACTG GTTATCTCTG CCTGTACACT TAGCATCTC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323657875	CHEV_11_45870227	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225777358					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:45947552 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adam19	ADAM metallopeptidase domain 19			Intron
				Noncoding-Transcript-Variant
Cpgi2772	CpG island 2772			98 bp distal
Cpgi2773	CpG island 2773			337 bp proximal
Gm72342	predicted gene, 72342			within coordinates
Rr402508	regulatory region 402508			719 bp downstream
Rr445869	regulatory region 445869			723 bp distal
Rr445870	regulatory region 445870			within coordinates
Rr445871	regulatory region 445871			1284 bp proximal
Rr445872	regulatory region 445872			1448 bp proximal
Tssr3474	transcription start site region 3474			758 bp downstream
Tssr101088	transcription start site region 101088			657 bp downstream
Tssr101089	transcription start site region 101089			628 bp downstream
Tssr101090	transcription start site region 101090			550 bp downstream
Tssr101091	transcription start site region 101091			495 bp downstream
Tssr107582	transcription start site region 107582			1384 bp downstream
Tssr107583	transcription start site region 107583			1449 bp downstream