rs225778642 SNP Detail

Summary

• ID
  rs225778642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94903056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCCCTG ACAGTTATGG
  GAGCTGGCTG TTAAAGATAG AGATGAAGAA AGCAGTTTGT GCTGAATCAG GATGGGCTGA
  AAGGCTGAGC TGGAGGCCCC AGTCTACCCA AGGGGGCCTA AAATAGGCCT TAGTGCACAG
  GCTCTCATCA CTGGATTGGG ACCATCAGGA AAGAACGCAG GCTGGCCTGC TCTGTTTAAG
  R
  GAGGAGGTGT CACCACTGTC TGTAGAGAGC AGCCACTCTG ATAGGAGAAG CAGCTACTAT
  CCTGAGTCTC CAGTCTGAAG GGAGGGCACA TGGCTCATCT GTCAGGGAGA GATAAAACCC
  ACATAGGAAA CCAGTAAAGA AACGACAAGG TCTTCATTTC TCAGAATTGG AGTAGCTTTA
  GACAAATAGG GGCGGCATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384337446	MGP_WTSI_11_94873544	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225778642					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384337446	MGP_WTSI_11_94873544	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94903056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	1569 bp distal
Gm36385	predicted gene, 36385	1979 bp upstream
Gm72634	predicted gene, 72634	332 bp upstream
Rr250	regulatory region 250	92 bp proximal
Rr454925	regulatory region 454925	1990 bp distal
Rr454926	regulatory region 454926	1489 bp distal
Rr454927	regulatory region 454927	343 bp distal
Rr454928	regulatory region 454928	within coordinates
Samd14	sterile alpha motif domain containing 14	within coordinates
Tssr104337	transcription start site region 104337	1954 bp downstream
Tssr104338	transcription start site region 104338	1937 bp downstream
Tssr104339	transcription start site region 104339	1865 bp downstream
Tssr104340	transcription start site region 104340	1851 bp downstream
Tssr104341	transcription start site region 104341	1811 bp downstream
Tssr104342	transcription start site region 104342	1747 bp downstream
Tssr110238	transcription start site region 110238	1905 bp upstream
Tssr110239	transcription start site region 110239	23 bp upstream