rs225782025 SNP Detail

Summary

• ID
  rs225782025
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8686763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGAAACA TATTTCATAT
  ATATTTATAT AAAAATATTT ATAAATATAA AATGTATATA AATTAAACAT ATAATATATT
  ACATACTTTA ATATATATCA TATATAATTA TATATATTGT TATATATACA TTATATAAGA
  TAATTATATC TAATATATAC ATAAACATAA ATATATACTT AAACTATTTA TGTTATTTAC
  A
  TTATATCTAA TATATTATAG ATATATATAT GCAATATGTA TATTAATATT GATAAATATA
  TGATATATAC ATAAATTTCA ATATATAAGT GAACATATGT GAATGTATGT GTAAGTTTAA
  GGGTTTGTAT AAAAACTGAT AAATATAAAA AGACAAATGT TTACCTATAA ACCATACATT
  ATAATCCATA GACATAATAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ZALENDE/EiJ
ss385078034	MGP_WTSI_12_8643569	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ZALENDE/EiJ
rs225782025					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385078034	MGP_WTSI_12_8643569	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8686763 () rs orientation: forward

Symbol	Name	Function Class
Gm56531	predicted gene, 56531	within coordinates
Tssr112727	transcription start site region 112727	501 bp upstream
Tssr115717	transcription start site region 115717	263 bp downstream