rs225795155 SNP Detail

Summary

• ID
  rs225795155
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:103572039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTGCTC TCGTTTTCCA
  TGGAGTTAGA GAGATGCCAT TCAGTGCGTA CGTGCAAGGC ATATTTGAAG ACATCCATCA
  CAGCTATTCA TTTAGTAAAT GAGATAATGA AAACTCAAAT AGTAGCCAAA GGTAAATCAT
  TAATTAATTC CCTCATTCAT CACACCTGTA CCAAAGCCTC AGGGGCTGGG GAACCTGGGA
  C
  TGCAGCTTGC CCGGAGAAGC CAGACGAGCC TCTTCTCTCC ATTTTGAGGA GATCCTTAAA
  GTAAATAAAG GTCCATATAG GATCTCAGAC AAAATTAACC CTGTATGTGT TACTGAATGT
  ATTAGTAACC TTATATAGCA CCAAAGAGAA CGATAGCAAA AAACCCTTTA AAACCCACAT
  TACAAGATGC TATTCTGCTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321632962	CHEV_5_103853192	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225795155					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:103572039 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16135	CpG island 16135	473 bp proximal
Ptpn13	protein tyrosine phosphatase, non-receptor type 13	1019 bp upstream
Rr615857	regulatory region 615857	within coordinates
Rr615858	regulatory region 615858	838 bp proximal
Rr615859	regulatory region 615859	1339 bp proximal
Tssr47557	transcription start site region 47557	1008 bp upstream
Tssr47558	transcription start site region 47558	1029 bp upstream
Tssr47559	transcription start site region 47559	1060 bp upstream
Tssr52160	transcription start site region 52160	1547 bp downstream
Tssr52161	transcription start site region 52161	1575 bp downstream