rs225800948 SNP Detail

Summary

• ID
  rs225800948
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164131150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATCTTAA GATGACGATA
  AAGCTTTAAA GATCTCCTGG GGCAATGGGG GTAAGACAAA GACTCTGACA TCCTGTATCT
  CCAGTCTCTA GGAATGTTTA CAACATCTCC TACTGAGAAA AAGGGAGAAG CCAACAAGCC
  AGATAAGTAA GGACAGACAA TGAATGCCTT TTGTGACTTC AGCCACCTTT CTTCACCTAG
  M
  AAAGAACATA TAAATGAGAA GATCAGCTGA GGTCTCAGTG GAGGCCCTTC CTGGTAAGAT
  GAAGTCCATC TTCTTCAGCC TTTCTCTGCT CCTCCTTCTG GAGAAGAAAG CAGCTGGGAT
  AGAACTCTAT GGTGAGTTCA GGGAGCAGCC GCAGAGAGGC ACTCAGGGAG AATGTCCATA
  AGGATGCCAT GGCAGTGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356428425	MGP_WTSI_2_164114966	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs225800948					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356428425	MGP_WTSI_2_164114966	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164131150 () rs orientation: forward

Symbol	Name	Function Class
Svs3a	seminal vesicle secretory protein 3A	38 bp upstream
Tssr740	transcription start site region 740	358 bp upstream
Tssr741	transcription start site region 741	523 bp upstream
Tssr742	transcription start site region 742	1044 bp upstream
Tssr21553	transcription start site region 21553	23 bp downstream
Tssr21554	transcription start site region 21554	3 bp downstream
Tssr21555	transcription start site region 21555	31 bp upstream
Tssr21556	transcription start site region 21556	379 bp upstream