rs225808865 SNP Detail

Summary

• ID
  rs225808865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132460962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCACCAGC TTGGCACCAA
  GACCATGCAA GCAGGTAGCA TAAGTGTTGA AAGCCACGTG TTGTATAGCA CAAACGTGCT
  CGATGCGGCA GCTGTCCTCA CAGGTCAAAT GGTTGTAGCT GACCGAGTTA TAGACGTAAT
  AACGTTGCAG GATGTGAGGC TCACTGGCAA TGCGGGTCAG CGCCGTGTGC ATGGAGCTGA
  Y
  GCTGGCATCC GGCACCTGGT AGGCCTCCGT CAGGCGGTAC TCCTGCTCCC ACCGTGGGGT
  CTCTTGTACA TTCGCCTGCC TCAGGTTCAA GAAGTAAGTC ACCAAGTCCT GGATTAGAGG
  CGCAGGGTAT GTCAGCAACG AGCAGTTGAT TCGTTCTGCC CACAACCCAA CTTCTCCCCA
  GGCGCTCTAA ATCGATCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363300692	MGP_WTSI_4_132289566	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225808865					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363300692	MGP_WTSI_4_132289566	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132460962 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	1018 bp distal
Cpgi14970	CpG island 14970	within coordinates
Gm69628	predicted gene, 69628	1329 bp upstream
Rr398540	regulatory region 398540	794 bp downstream
Rr601049	regulatory region 601049	1196 bp distal
Rr601050	regulatory region 601050	1111 bp distal
Rr601051	regulatory region 601051	704 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr39417	transcription start site region 39417	1808 bp downstream
Tssr43695	transcription start site region 43695	1930 bp upstream
Tssr43696	transcription start site region 43696	1213 bp upstream
Tssr43697	transcription start site region 43697	1093 bp upstream
Tssr43698	transcription start site region 43698	1065 bp upstream
Tssr43699	transcription start site region 43699	1174 bp downstream
Tssr43700	transcription start site region 43700	1186 bp downstream
Xkr8	X-linked Kx blood group related 8	1105 bp upstream