rs225811143 SNP Detail

Summary

• ID
  rs225811143
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115151657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCACACCCC TCGTCACGTG ACCGCGGTGG
  GCGGAGTCGG CGGCGGGCGA GCCTGGGCCT GTTTCCGCGT CCGCACGAAC CGGCTCAGCA
  TCCCGGGAAT CCTGCGGTGG GAAGGAGCTG ATCTTTGCGA TCTGACCCCA CTCTGATGGA
  M
  TAGAATACAG GACATGATCG CCCGGCCCGA GGAATGGTCC CAAAGCGGAT AGCCATCACA
  CCAGGGGTCA TCACACGCAA AGTCCGGCCA AGGTGCCCTT GAGTCTCTTT CTCTGGGCGC
  ACAAATCCGG GCTCATGAAC TTTACAGttc                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484107	CHEV_10_114752808	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225811143					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115151657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	within coordinates
Gm10752	predicted gene 10752	within coordinates
Gm67120	predicted gene, 67120	within coordinates
Rab21	RAB21, member RAS oncogene family	117 bp upstream
Rr402237	regulatory region 402237	within coordinates
Rr402238	regulatory region 402238	408 bp upstream
Rr439193	regulatory region 439193	163 bp distal
Rr439194	regulatory region 439194	113 bp distal
Rr439195	regulatory region 439195	within coordinates
Rr439196	regulatory region 439196	54 bp proximal
Rr439197	regulatory region 439197	1778 bp proximal
Rr439198	regulatory region 439198	1919 bp proximal
Tssr95806	transcription start site region 95806	698 bp downstream
Tssr95807	transcription start site region 95807	658 bp downstream
Tssr95808	transcription start site region 95808	82 bp downstream
Tssr95809	transcription start site region 95809	58 bp downstream
Tssr99318	transcription start site region 99318	865 bp upstream
Tssr99319	transcription start site region 99319	822 bp upstream
Tssr99320	transcription start site region 99320	230 bp upstream
Tssr99321	transcription start site region 99321	137 bp upstream
Tssr99322	transcription start site region 99322	128 bp upstream