rs225825633 SNP Detail

Summary

• ID
  rs225825633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13089202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAGACAG GGGGAAGGGA
  GGGGGCGTGA AGCTAGTGAG GATGCTGGCC CTCCTGAAGG GTCATGCAAT AGAGTTATCC
  ATGCGTGCAA CTGGATAGGC ACACCAGCCA CTCTTGCGTC CCCTGGCATG GACAACTTAA
  GGGTTTATGA TTTCAGAGGC CTTAGACTGT CATGGCAGAG AGGGTGTGAC AGGATGGAGC
  Y
  GCTCCTGCTG TGGCCACCAG GCAGCAGAGG AAAGGGAGGC CATCTGGGGG ACTTCTCTTT
  CTCCTCAAGC TTCCAGGCTG TGTGGCAATG CTGCCCACAC CACTCAGGGT GCAGCCTTCC
  CCTCAGTTAG TTCTCTCAGG AAACGCCCTC ATGAACACAC GCGGACATGT CTCAGTCTCC
  CAGGCTGACA ATGGAGATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373736755	MGP_WTSI_8_13039202	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225825633					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373736755	MGP_WTSI_8_13039202	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13089202 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	1870 bp distal
Rr659844	regulatory region 659844	1354 bp distal
Rr659845	regulatory region 659845	574 bp distal
Rr659846	regulatory region 659846	1352 bp proximal
Tssr76325	transcription start site region 76325	1899 bp downstream
Tssr76326	transcription start site region 76326	1850 bp downstream
Tssr76327	transcription start site region 76327	1840 bp downstream
Tssr76328	transcription start site region 76328	1812 bp downstream
Tssr76329	transcription start site region 76329	1364 bp downstream
Tssr76330	transcription start site region 76330	1217 bp downstream
Tssr76331	transcription start site region 76331	101 bp upstream
Tssr76332	transcription start site region 76332	124 bp upstream
Tssr76333	transcription start site region 76333	156 bp upstream
Tssr76334	transcription start site region 76334	167 bp upstream
Tssr76335	transcription start site region 76335	335 bp upstream