rs225830446 SNP Detail

Summary

• ID
  rs225830446
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:117498450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTAGGAG TTGGAAGAGC
  TTGGGTGAGC TGCTAGCGCT GGGAGCACTC AGTACTCCGG GACGCCCCCT AGAGCGGGAG
  AGGGTCGGAC CCCCGGGAAT CTCAAATATC GACTTTCTGA TGGTGTGTTC AGATATGACT
  TCCTGGTGAA GGAGCATTCC TTGTGTTGTA AGTGCATCTC ACGACCTGAG CAGGCCAGAC
  W
  TGTTTTTTAT GTTAAAAGGA GGGCCTGCTT GTCATCCTGG TGATCCTCAA GCCACTCAAG
  AAAGCCCCAG TAAGCTCTCA CTGACTTCCT TCCTACTCAG CAGAGCTTGG GAATACCTTG
  GTACATCCTA CTCATACTTT TTTTAAAAAT TATTTTTTGA TTATTATGTA GTATTTACTG
  AAAAATCGTA ACAATGGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324202010	CHEV_12_118773303	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225830446					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117498450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5227	CpG island 5227	75 bp distal
Gm60307	predicted gene, 60307	234 bp upstream
Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	Intron
Rr474129	regulatory region 474129	within coordinates
Rr474130	regulatory region 474130	880 bp distal
Rr474131	regulatory region 474131	121 bp distal
Tssr115537	transcription start site region 115537	920 bp downstream
Tssr115538	transcription start site region 115538	888 bp downstream
Tssr115539	transcription start site region 115539	874 bp downstream