rs225833299 SNP Detail

Summary

• ID
  rs225833299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95859850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGAGAG AGTTAGGACT
  TATTTTTCCG TCTTTTAGTC AATCACAGCT GAAGGTAGTT TGTCAAAAGT ATCAAAGTAA
  AATCATCCTT AAATCCTTTT TATTAGAACC AACGAACCAC TTTAGAATGT TTGCATCAGT
  TTGTTTTGTA CAGTAGAAGT TTCTTTGGAG GTCTGAGAAA CATGGAAAAG GTCTTGGACT
  R
  CAGGCCATCC TAGGCCACAT AGCCAGTCCT ATCCTCAAAC AGACAAGGAT GGAGCAGAGT
  GTAGCACAAA GCTAGTGGTT TGGTCCCTGC TATTTGAAGA AGGAGAGGTG GTAAAACACT
  TGGATTTTTG CCCACTTTGT GACATTGTAT CTCTGTATCC TTGGCTGTTC TGGAATTCAA
  TCTGTAGACC AGGCTGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358910666	MGP_WTSI_3_95756461	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225833299					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358910666	MGP_WTSI_3_95756461	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95859850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	1048 bp distal
Gm56819	predicted gene, 56819	1247 bp upstream
Gm65572	predicted gene, 65572	852 bp downstream
Rr375411	regulatory region 375411	650 bp downstream
Rr581095	regulatory region 581095	1258 bp distal
Rr581096	regulatory region 581096	1200 bp distal
Rr581097	regulatory region 581097	554 bp distal
Rr581098	regulatory region 581098	560 bp proximal
Rr581099	regulatory region 581099	1591 bp proximal
Tssr30663	transcription start site region 30663	1452 bp downstream
Tssr30664	transcription start site region 30664	1171 bp downstream
Tssr34570	transcription start site region 34570	1502 bp upstream