rs225835442 SNP Detail

Summary

• ID
  rs225835442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69887914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGCTCAGC TGCTGTTCCT
  GGCCGGTCCC TGGGCGCAGT CCCCGGACGC CGGGTGTCCG TGGTCCTTTG TGCGCGGCCG
  CAGACCCGCT GGTCCCGAGT CTAAGAGCTG CACCGCGGCG CGCACAACCG CCCGCGGTGC
  CCCGGAGACA GCGAGGTGGC CGTGGAGTCG CGCTGTGCGC CTGCCGGGCC GTGCTGCGCT
  R
  GCGGCTACCG CGGGGCCCGG GCCACTGCCG CTCTCGTTGC CGCCGCCGCT GCGGCTGCTG
  ACATTGCAGA GGCGGCTGCT CCGTCTGAGC CGAGCCCGGC GCGGAGGGGG CGGCACTGCC
  GGCCGGGAGG GGGAGCGCGG GGCGGAGCCG CGGGCTTGAC TGCACCGAGC CACCCCCGCC
  GCCAGGTTCC TGCGGCGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388958217	MGP_WTSI_13_69878673	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225835442					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388958217	MGP_WTSI_13_69878673	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69887914 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5814	CpG island 5814	within coordinates
Gm60959	predicted gene, 60959	within coordinates
Gm60969	predicted gene, 60969	420 bp downstream
Rr482198	regulatory region 482198	1149 bp distal
Rr482199	regulatory region 482199	84 bp proximal
Rr482200	regulatory region 482200	119 bp proximal
Rr482201	regulatory region 482201	206 bp proximal
Rr482202	regulatory region 482202	1121 bp proximal
Tssr123143	transcription start site region 123143	844 bp upstream
Tssr123144	transcription start site region 123144	822 bp upstream
Tssr123145	transcription start site region 123145	805 bp upstream
Tssr123146	transcription start site region 123146	358 bp upstream
Tssr123147	transcription start site region 123147	50 bp downstream
Ube2ql1	ubiquitin-conjugating enzyme E2Q family-like 1	within coordinates