rs225837270 SNP Detail

Summary

• ID
  rs225837270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:7506780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACAGATAT AAGGAATCTC AAAAGAGAAA
  ACAGAAGGCA ACAGACAGAA GGCACAAGGG AGCCAGAGAA CCAGAGAGAC CTTGTGAAAG
  ACTTAACAGA CAGACAAGCA GGGCAAGAAA CAGGCGCGGg agggagaggg agagagagag
  R
  gaggggagag agagagagag agagagagag agagagagag aggagagagg agagagagag
  agagaggaga gaggagagag agagagagag agagagagag agaggagaga ggagagagag
  agagagagga gagagagaga ggggggggag                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325888089	CHEV_X_7217667	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225837270					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7506780 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi22570	CpG island 22570			1591 bp distal
Rr689618	regulatory region 689618			7 bp distal
Syp	synaptophysin			Intron
				Noncoding-Transcript-Variant
Tssr160397	transcription start site region 160397			1844 bp downstream
Tssr160398	transcription start site region 160398			552 bp upstream