rs225837664 SNP Detail

Summary

• ID
  rs225837664
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:87953128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCTTTTT TGAACTGGTT
  TGGGGTGGTG GCTGTTTTCC AGAGTTTATC TTTTGTTCAC CATCTTTTTT TCTCCAGATT
  GCCAACTTCT TTTCTCCCTG TGTTTTTTGT CTCTCTTCCT CTTTCTGACT CAACTTTATT
  GCTTTCTTCT TTTCCTCTCG CCGGGAGACC ATGAAAGCAC AACTCGGCCC TTGCATTGAA
  S
  ACTTGAGAAT AACGGGAAGG AGGTTTCCTG GAGCGTCCCA GGTTCTCCAT GACCACGTTC
  AGTTTTTCCC ACTGCTCACA AAGTAGATGA TGGGGATTAG ACAGGACCAG GTCCAGCCAA
  GTTCAAAGCA GCACGTTTCC AACTCGAGTA GTGTGATTCT CCTAAAACTG GTACACCCAT
  CCTCCAGGAT TCAGCCCAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362318138	MGP_WTSI_4_87680795	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225837664					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362318138	MGP_WTSI_4_87680795	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:87953128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14428	CpG island 14428	1100 bp distal
Gm12631	predicted gene 12631	within coordinates
Mllt3	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	1527 bp upstream
Rr398326	regulatory region 398326	268 bp downstream
Rr398327	regulatory region 398327	576 bp upstream
Rr594953	regulatory region 594953	1037 bp distal
Rr594954	regulatory region 594954	within coordinates
Rr594955	regulatory region 594955	752 bp proximal
Tssr42376	transcription start site region 42376	1603 bp upstream
Tssr42377	transcription start site region 42377	1576 bp upstream
Tssr42378	transcription start site region 42378	1518 bp upstream