rs225839161 SNP Detail

Summary

• ID
  rs225839161
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43630277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCCTACT ATGATCCTCA
  GAGAACCTCC CTAGGTCATT TTGAACATCT CTGCAAGACC CTGTGTCCAA GCTCCAGGAC
  ACAGGTTGGC CTGGATGTTC CTGACAGTAC ACAATTTCAC ATTGCTGTGC TGTTCTCCTG
  CCCCTTCCTC CTGAAAACCT CATTTTTGTC TCATTTTCTG GAATCTTAGT TCTCCTTACC
  R
  TTCTCCTATG CTGCAACAAT CAGAAGGGAA GTTCTAGTGG CTCCAGGCAG GAAAAATCTC
  TGTGTTTCTT CATTTTGCCC TGGAACTCAA GCTAGATCTC TGCTTCTGAG ACTTCTCACA
  CTCGCAGCCA AGGCCAAGGC TTACCCTAAT ACCTAGTTCC AAACAGGCAC CTCTCCCGTT
  TCTGAGGACA TTTCCCACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269138	CHEV_2_43595785	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225839161					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43630277 () rs orientation: forward

Symbol	Name	Function Class
Gm39804	predicted gene, 39804	432 bp downstream
Rr556297	regulatory region 556297	325 bp distal
Tssr17595	transcription start site region 17595	718 bp downstream
Tssr23873	transcription start site region 23873	1585 bp upstream
Tssr23874	transcription start site region 23874	1236 bp upstream