rs225840221 SNP Detail

Summary

• ID
  rs225840221
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70214101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCAGAGCG AGTACAGGGG TATACCTCTC
  TGTCCTGTGA CACTCCTGCC TCTGTCCAGG TGCTCCTGTG CTCCTGTGGA CAAAAGTCCC
  TGAATCCACA ATGGATTTTG CTTAAGAGCT AACTACTTAA CTAACTGATC CCTTGCCTCG
  K
  GGTCGAAGAG TCCGTCAAAA CATGCGGCTG AGagccgggc gtggtgcacg cctttaatcc
  cagcactcgg gaggcagagg caggcggatt tctgagttcg aggccagcct ggtctacaaa
  gtgagtgcca ggatagccag ggcttcacag                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323735035	CHEV_11_70136777	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225840221					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70214101 () rs orientation: forward

Symbol	Name	Function Class
Alox12e	arachidonate lipoxygenase, epidermal	647 bp upstream
Cpgi3180	CpG island 3180	852 bp distal
Rr450275	regulatory region 450275	1423 bp distal
Tssr108941	transcription start site region 108941	799 bp upstream
Tssr108942	transcription start site region 108942	761 bp upstream
Tssr108943	transcription start site region 108943	738 bp upstream