rs225852160 SNP Detail

Summary

• ID
  rs225852160
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32341279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGGTCGTT GACACACAGG CCGCCGTCGC
  GGTTGACGTC GAGTGTCTGG AAGAGGCTCC ACAGGCGTAG CTGGTGGTCC GGGCCGCCAC
  AGACGGCGCC GCCGCACGGG TCCCCTACAG AAGCCGGCGA CGAGGCGGAC GACGAGGCGG
  K
  GGCGGCGGCG TCCGGCGGCG GGGAGGCCAC GCAGCGGCAC AACACACTGC TCACCATCGG
  GCGCGAGGCG GGGGCGCCGG ACGCCGGGCT GAAGGCGGCA GGAGAGCGAC CCGAGCGCGG
  AAGCACGCCG GCTTTCCTCA GACAGCGAGC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320222311	CHEV_2_32306787	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225852160					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32341279 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11510	CpG island 11510	within coordinates
Naif1	nuclear apoptosis inducing factor 1	within coordinates
Rr396886	regulatory region 396886	114 bp upstream
Rr396887	regulatory region 396887	677 bp upstream
Rr554914	regulatory region 554914	800 bp distal
Rr554915	regulatory region 554915	145 bp proximal
Rr554916	regulatory region 554916	228 bp proximal
Slc25a25	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	within coordinates
Tssr17282	transcription start site region 17282	805 bp downstream
Tssr17283	transcription start site region 17283	177 bp downstream
Tssr17284	transcription start site region 17284	907 bp upstream
Tssr17285	transcription start site region 17285	1041 bp upstream
Tssr23522	transcription start site region 23522	101 bp downstream
Tssr23523	transcription start site region 23523	129 bp downstream
Tssr23524	transcription start site region 23524	1917 bp downstream