rs225853356 SNP Detail

Summary

• ID
  rs225853356
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118454283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACATAAAC AGGACTTCAG
  GGATGATAAT TAACAAGAAA ACATAACTGG GCCTCAAGAC ATACTGACTT TTAGAGGACA
  TAGGAAGGGG ACTCACAAAG GAGAGAAAGA TACAAGTCCC GACAGGCCAG TATCAAGTAA
  GACCATGATG ATTCTACAGG ATTAGGGCCA GTGATCACGA AAAATAACCC GGACAAAAAG
  K
  TCCCAGGCGT CAGCTTAACC CACTTCTTTG TTTTGCCACT CAGCCAACAG CAACATACTC
  TTTTCCATCC CTTTAACTGT ACTTCACTCG CGAGAAGTGG AACCGAACCT ACACTGCATC
  ACCTGCAAAC ACAAGCTTTC TTCAAAAGCG CCTTGTTTTT GAGACAAAGT TTGACTACGT
  CGCTAGGGCT GATCTGCATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372901672	MGP_WTSI_7_125998574	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225853356					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372901672	MGP_WTSI_7_125998574	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118454283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19628	CpG island 19628	49 bp proximal
Iqck	IQ motif containing K	692 bp upstream
Knop1	lysine rich nucleolar protein 1	within coordinates
Rr654563	regulatory region 654563	3 bp proximal
Rr654564	regulatory region 654564	543 bp proximal
Rr654565	regulatory region 654565	904 bp proximal
Tssr68731	transcription start site region 68731	675 bp upstream
Tssr74457	transcription start site region 74457	589 bp downstream
Tssr74458	transcription start site region 74458	891 bp downstream
Tssr74459	transcription start site region 74459	914 bp downstream
Tssr74460	transcription start site region 74460	924 bp downstream
Tssr74461	transcription start site region 74461	957 bp downstream
Tssr74462	transcription start site region 74462	973 bp downstream
Tssr74463	transcription start site region 74463	1301 bp downstream