rs225854603 SNP Detail

Summary

• ID
  rs225854603
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28526586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCACCCGA CTGCTCTTCC
  AAAGGTCCGG AGTTCAAATC CCAGCAACCA CATGGTGGCT CACAACCATC TGTAACAAGA
  TCTGATGCCC TCTTCTGGTG TGTCTGAAGA CAGCTACAGT GTACTTACAT ATAATAAATA
  AATAAATCTT TAAAAAAAAA AAAAAAAAAA AATCCCCCTA GGGCTGGACT AACAGGTTGG
  K
  TGTGATCAAT TTGACAGTGT TGGCTCACAA CCATCTGTAA TGAAATCTCA TGCCTTCTTC
  TGGTGCATCT GAAGACAGCT ACAGTGTACT TAGATATAAT AATAAATAAA TCTTTTTTAA
  AAAGTATATA GGTTCTTAAC TGTTGAGCTA CGCCATTAGT CCTCAGTGGG TTTTTGTTTG
  GTTGGTTTTC TGAGACAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss370868028	MGP_WTSI_7_29612180	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	T	T	T	G	G	G	G	T	T	T	G	T	G	G	G	G	T	T	G	G	G	T	T	G	T	T	G	G	T	T	G	G	G	G	T	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs225854603					SNP	G	G	G	G	G	T	T	T	G	G	G	G	T	T	T	G	T	G	G	G	G	T	T	G	G	G	T	T	G	T	T	G	G	T	T	G	G	G	G	T	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370868028	MGP_WTSI_7_29612180	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28526586 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18723	CpG island 18723	1668 bp distal
Ech1	enoyl coenzyme A hydratase 1, peroxisomal	within coordinates
Rr155798	regulatory region 155798	within coordinates
Rr167384	regulatory region 167384	585 bp distal
Rr380577	regulatory region 380577	1220 bp downstream
Tssr65547	transcription start site region 65547	1946 bp downstream
Tssr65548	transcription start site region 65548	1876 bp downstream
Tssr65549	transcription start site region 65549	1847 bp downstream
Tssr65550	transcription start site region 65550	1798 bp downstream
Tssr65551	transcription start site region 65551	361 bp upstream
Tssr65552	transcription start site region 65552	470 bp upstream