rs225860656 SNP Detail

Summary

• ID
  rs225860656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:142066713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTCCTTC AGGGCGGGTA
  CTTGATCCAT CAGCCAGGGC CCTGCATCTG GATTGGCCAG TGCTGTAGCT GGAACTGTTA
  TGTGTCCTCC AACTGCTGAG GTCCTCTTCA GGGAAGGCAA GCATATATCC AGGGTGACTC
  AGGCATATTC TGAAAGTGAA GAAGAGAGTT CAATACTGTG TCTCTTGGGG GCTGGGAGGA
  R
  GGTCAGGGCA TACGGAATGA GGTTGCAACC TTCATAGGTA TTGAGGGCAA GGTAAGGGGC
  TGCAGAAATG GGGCAGGCCT TTCCTTGAGG GATGAGGTAG AAGCAAGCTT GTTCTTACAC
  ACCATGGATG CGGGGAAGGG CACCTGTCCT GGTGCCTAAT GTGCTTAGGG CAAATGCAAA
  TACCTTGGGT TCACTGGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373452279	MGP_WTSI_7_149698881	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225860656					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373452279	MGP_WTSI_7_149698881	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142066713 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tnnt3	troponin T3, skeletal, fast			Intron
				Noncoding-Transcript-Variant
Tssr2457	transcription start site region 2457			1450 bp downstream
Tssr70199	transcription start site region 70199			1661 bp downstream
Tssr70200	transcription start site region 70200			1624 bp downstream
Tssr70201	transcription start site region 70201			1475 bp downstream
Tssr70202	transcription start site region 70202			931 bp downstream
Tssr70203	transcription start site region 70203			906 bp downstream
Tssr70204	transcription start site region 70204			720 bp downstream
Tssr70205	transcription start site region 70205			696 bp downstream
Tssr75809	transcription start site region 75809			866 bp upstream
Tssr75810	transcription start site region 75810			824 bp upstream
Tssr75811	transcription start site region 75811			672 bp upstream