rs225863139 SNP Detail

Summary

• ID
  rs225863139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:117662097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGGTAG AGGCTAGGCT
  TTCTCAATCC TGAAAGGATT TCTACACCCA ATGGTCACAG GTTTCCAGAC TCTCTTAGAA
  TGTGACTCAA CTCTCCCATT TACACATAAC AACAGTAAAT CAAAAACCAC CTCCCTGCAC
  TAAGGCAATC ACAATTGCTC TCCTGGACTT TAGGATTGTC AAGAAGCCTA GGGGAGGGGG
  R
  GGAGCTGGGG GGGGGGGAGG GAGAAGCAGT TTCAGGCCAC CCGCACACGG TGAGGAATGT
  CGCTGTCAAG CAAGGAAAAA TGGAAAGACG AAGAGAGAAA AAAAAAATCA GAACTTTTCA
  GACTCCATGA GCCTTGGCCC TGCCACTGAT AAAAGTGAAG AGGAGGGAAC GACTAGTTCA
  GCCTTGGAGG TACTGTCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320900609	CHEV_3_117571366	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225863139					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117662097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13747	CpG island 13747	52 bp proximal
Gm56798	predicted gene, 56798	569 bp upstream
Rr583874	regulatory region 583874	1154 bp distal
Rr583875	regulatory region 583875	478 bp proximal
Rr583876	regulatory region 583876	728 bp proximal
Rr583877	regulatory region 583877	742 bp proximal
Snx7	sorting nexin 7	Intron
Tssr31404	transcription start site region 31404	572 bp upstream
Tssr35382	transcription start site region 35382	457 bp downstream
Tssr35383	transcription start site region 35383	482 bp downstream