rs225865518 SNP Detail

Summary

• ID
  rs225865518
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32089420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA AAGAAAAGAA AGAAAGAAAG
  A
  AAGGAAGGAA GAAAGGAAGA AAGAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325136260	CHEV_16_32270688	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225865518					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32089420 () rs orientation: forward

Symbol	Name	Function Class
Gm60870	predicted gene, 60870	within coordinates
Rr514670	regulatory region 514670	696 bp proximal
Rr514671	regulatory region 514671	877 bp proximal
Smco1	single-pass membrane protein with coiled-coil domains 1	878 bp upstream
Tssr137957	transcription start site region 137957	871 bp upstream
Tssr137958	transcription start site region 137958	928 bp upstream
Tssr137959	transcription start site region 137959	943 bp upstream