rs225872178 SNP Detail

Summary

• ID
  rs225872178
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16191478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATTCAC TCACTCACTT
  AGGGCCAATC CCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCCCTC CCTCTCTCTC TCTCTTCTCT CTCTCTCCCT TCCCTCCCTC TCACTCCCTC
  CCCTTCCCTC CCCTCCCCCT CTCCTTCTCT CTTCCTTTCT CCCTCCCCCT CCCTTGCTGT
  M
  CCTCTTTCTC CCCCTTTCCC TCTGTCTTCT CTTCCCCCTC TCTCTTTTCT CCCTGTCTCT
  CCCTCCCATC CTCTCTCAGT CTCTGTCTCC CCCCACCCTG TCTCTTCCTT CCTCCCTCCC
  TCTCTCCCTC CCTCCCTCCC TCCCTCTCTC CCTCCCTCCT TCCTTCTCTT TTACTCGGAG
  ACAGTCAGAA CTCTCCTCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387820261	MGP_WTSI_13_16108726	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225872178					SNP	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387820261	MGP_WTSI_13_16108726	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16191478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5296	CpG island 5296	431 bp proximal
Inhba	inhibin beta-A	within coordinates
Tssr118435	transcription start site region 118435	553 bp downstream
Tssr118436	transcription start site region 118436	187 bp downstream
Tssr118437	transcription start site region 118437	31 bp upstream
Tssr118438	transcription start site region 118438	154 bp upstream
Tssr118439	transcription start site region 118439	171 bp upstream
Tssr118440	transcription start site region 118440	390 bp upstream
Tssr118441	transcription start site region 118441	480 bp upstream
Tssr118442	transcription start site region 118442	726 bp upstream
Tssr118443	transcription start site region 118443	1207 bp upstream
Tssr118444	transcription start site region 118444	1274 bp upstream