rs225873380 SNP Detail

Summary

• ID
  rs225873380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75063378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCCGCT CCAACTCCCT
  GTCGCTTCGT CCCGCCCTCC CCTACGCCCC CCCTCCCCGC TTGCCACTAT AAATAGCCTC
  TTTTCCCGTT TCCTAAATTC TCTGCTGACG TCGGCAGCGC GTCAGTGTGT AGGAGCCGCG
  GCCGCATGAA TGAGCCGCCG CACGAGTACT ACGCGCGCCT ATAAAAGCGG CGGCGCCGGC
  Y
  GGGCTGCGGG AGGCAAGCCG GCACTGGTGC GACGCGGCCC GACAGGTAAG GACCACCAAC
  AGTCGGAGAT GGGCAGATGC GCGGACGCCA TGGGAAGGCG AGGAGGGGAC CGGAGGGGCG
  GCGGGTTGGA GGGGGACTCC GGAGTGAGGA TGGGGGGCAG AGTGGGAGGG ACGAAGGTTC
  CTTTCAGCTT GGTGGACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383894021	MGP_WTSI_11_74986054	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225873380					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383894021	MGP_WTSI_11_74986054	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75063378 () rs orientation: forward

Symbol	Name	Function Class
1700016P03Rik	RIKEN cDNA 1700016P03 gene	within coordinates
Cpgi3252	CpG island 3252	1629 bp distal
Cpgi3253	CpG island 3253	1050 bp distal
Cpgi3254	CpG island 3254	within coordinates
Mir132	microRNA 132	1130 bp upstream
Mir212	microRNA 212	836 bp upstream
Mirc19	microRNA cluster 19, including Mir212 through Mir132	836 bp proximal
Rr402719	regulatory region 402719	446 bp upstream
Rr451077	regulatory region 451077	1881 bp distal
Rr451078	regulatory region 451078	within coordinates
Rr451079	regulatory region 451079	661 bp proximal
Rr451080	regulatory region 451080	1162 bp proximal
Tssr102928	transcription start site region 102928	97 bp downstream
Tssr102929	transcription start site region 102929	74 bp downstream
Tssr102930	transcription start site region 102930	1 bp upstream