rs225878114 SNP Detail

Summary

• ID
  rs225878114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28400487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGCTGT GTTACAAGTG
  CTTCTCTAGG TGGTAGAGAG GTGAGGGGTT ATGTCTGTGC TCAGTGTTCT GACCGATGGG
  CATCTGAATG ATTCATAGTC TAACATTTCC TGAAAAAAAG CAAGCCTGAG ACAGCCATCA
  GTCCAGCACC AGGGAACCCA GACAGGTATC TAACCTGAGA TGACCACCAG TCAGGTGGTC
  R
  TGCAGGCCCT GAGGGTAGAG AGCAAGCTGG AGACTAGAAA AACAACAACT GAGACCACAG
  GCTTCATGCT GGAATGAGCA CAGGACCTCA CACAGGGCCA CTTGGGTGGA CCAGGCAAGG
  AACACACCAA AGATAACCGC CAGACTATCA CCACAGGGAT TGAACAGGGA GACTAGCCTG
  AGATGACCAG CAGTCTGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
ss385408198	MGP_WTSI_12_29035353	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
rs225878114					SNP	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385408198	MGP_WTSI_12_29035353	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28400487 () rs orientation: forward

Symbol	Name	Function Class
Gm25564	predicted gene, 25564	94 bp downstream