rs225887182 SNP Detail

Summary

• ID
  rs225887182
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105721703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAATAAA CATACATAAG
  ACGGCTGGGG ATGTAGGTCA GTGGTAGAAC TACATGCCTG GCACACACAA GGCCCTGGAA
  TTTAAGCACC AGAATCAAAG AGCTTCCTGT CTGAGACATA CATGAGGTTT GCTTTGCACT
  TCCATGGAGC AGTCTGTGAG GTAAATTGGC TTGGGGGATT TTTAACTCAT CCAAACGATT
  R
  GCAAAACACG AAACTAGGAA AAGCCACGAT CCTCAGGAGG CTGTGTCCTC TCAGAATGGG
  TCAGGCTTGG ACCTCACTTC CTTGGCTTCT AGCAATTAGG ACCATTTGGA CAAACCCTAA
  ACCCTGCTAC CTTCTTCAGC TATGTGGTAG GCCTGCTACC ATGCCTGTCT TCCATGTGAG
  TCAGAGGGGA GTTATGGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863274	CHEV_3_105617305	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225887182					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105721703 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	1180 bp upstream
Rr582787	regulatory region 582787	688 bp proximal
Rr582788	regulatory region 582788	1203 bp proximal
Rr582789	regulatory region 582789	1746 bp proximal
Tssr31084	transcription start site region 31084	1143 bp upstream