rs225888937 SNP Detail

Summary

• ID
  rs225888937
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109835941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTACAC CTGTAATGCC
  AGAGGTGGAG GCAGCAGGGT TGCTATGAGT TTAAGGTCTG CACAGCAAGA CCCAGACTCA
  AATTCAAACT CAAACCAAAC CAAATCAGAA AGAGTGGACT TTAAAATGAT CGTCACTATT
  AAAATATTAA GAGTTGCTGG GTAGTGGTGG CGCATGCCTT TAATCCCAGC ACCAAAAAAA
  M
  AAAAAAAAAA AAAAGAGTTT TACTATTAAG AACTCATTCG GCTGTTATTG AAAGCATTGT
  AGATATTGGT CAGCATGTAC TGTGGGTATG TAGTGAGGGT GAGATACTGG CACTGTTCTC
  AGAATGTCTG TCTGATCTTG TGTGAGAAAA GCTTATGAAA CTGTGTAGTG CAAGAGTTAT
  AGATGGCTTG GGCTACCCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/2J	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	WSB/EiJ
ss372702013	MGP_WTSI_7_117380248	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/2J	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	WSB/EiJ
rs225888937					SNP	C	C	C	C	C	C	C	C	C	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372702013	MGP_WTSI_7_117380248	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109835941 () rs orientation: forward

Symbol	Name	Function Class
Swap70	SWA-70 protein	within coordinates
Tssr68496	transcription start site region 68496	1005 bp upstream
Tssr68497	transcription start site region 68497	1144 bp upstream