rs225889852 SNP Detail

Summary

• ID
  rs225889852
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55166178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCACCCCTA GTTTTCCATT CACGTTATCC
  TGTTGCTTCT GAAATGTGTC AGAGCCTCCA GACCCTTCCC ATCACCACGC CAAAAAGGCC
  TTTCCCGTTA GCATTGCCTT TCcaccctct ccagtctctc acccccacag cagctctgtg
  Y
  tcctcctatg tcggagcatg gtctcattct cttcattgtg ctttatgtta taatcagaag
  gcatcgttct cattgttgat catctgtctc ctaaactgta agccctggga ggaagaggcc
  tgtctctctt atcttcctct tcattcctag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324640904	CHEV_14_55547558	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225889852					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55166178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6479	CpG island 6479	1653 bp distal
Gm62292	predicted gene, 62292	1961 bp upstream
Rr389680	regulatory region 389680	340 bp upstream
Rr492368	regulatory region 492368	1471 bp distal
Rr492369	regulatory region 492369	1799 bp proximal
Tssr128674	transcription start site region 128674	1951 bp upstream
Tssr128675	transcription start site region 128675	1916 bp upstream
Tssr128676	transcription start site region 128676	1693 bp upstream