rs225895400 SNP Detail

Summary

• ID
  rs225895400
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:43130802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCAGCTGTC CAAATGTCTC TTCCTGGACC
  CTGGAGCTGT GAGTCCTCAG CTTTGCTGAC CAAGAAAGAA TCATGATCAC CGGCGTGAGG
  GTGCAGCAGG CACCACACCA GCCACTCTCT GCCCAGCAAT CTCCTGTTAG TAGCAGGTAC
  R
  ACCCCTCGCA GAGCAGCCTT GCCCTCCTCC CACACTCCTC CGTGTCTTCC CTTGCCACCA
  CTTTAATATC AATGTTGCCT ACTTGCCCTC CTGACCCAAC TCGCCCTACC CGAAGCTCCT
  GAGTGCTCAA TCGTATCTGC TCAGACTACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319703858	CHEV_1_43148487	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225895400					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:43130802 () rs orientation: forward

Symbol	Name	Function Class
8430432A02Rik	RIKEN cDNA 8430432A02 gene	946 bp upstream
Cpgi213	CpG island 213	14 bp proximal
Rr410291	regulatory region 410291	456 bp proximal
Rr410292	regulatory region 410292	957 bp proximal
Rr410293	regulatory region 410293	1077 bp proximal
Tgfbrap1	transforming growth factor, beta receptor associated protein 1	within coordinates
Tssr11467	transcription start site region 11467	796 bp downstream