rs225897000 SNP Detail

Summary

• ID
  rs225897000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127126039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCA GTCTTTGGGA CGCATTAGAA
  R
  GCTAAAAGAG GAGGAGAGCT CTTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382182455	MGP_WTSI_10_126727226	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225897000					SNP	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382182455	MGP_WTSI_10_126727226	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127126039 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2349	CpG island 2349	587 bp distal
Cpgi2350	CpG island 2350	155 bp proximal
Ddit3	DNA-damage inducible transcript 3	623 bp upstream
Gm4189	predicted gene 4189	within coordinates
Gm20492	predicted gene 20492	331 bp downstream
Gm66222	predicted gene, 66222	within coordinates
Mbd6	methyl-CpG binding domain protein 6	1152 bp upstream
Rr369092	regulatory region 369092	298 bp upstream
Rr402323	regulatory region 402323	783 bp downstream
Rr402324	regulatory region 402324	1162 bp upstream
Rr440863	regulatory region 440863	1675 bp distal
Rr440864	regulatory region 440864	1291 bp distal
Rr440865	regulatory region 440865	1004 bp distal
Rr440866	regulatory region 440866	151 bp distal
Rr440867	regulatory region 440867	114 bp proximal
Rr440868	regulatory region 440868	449 bp proximal
Rr440869	regulatory region 440869	1168 bp proximal
Tssr3392	transcription start site region 3392	1219 bp downstream
Tssr96177	transcription start site region 96177	1649 bp downstream
Tssr96178	transcription start site region 96178	1619 bp downstream
Tssr96179	transcription start site region 96179	156 bp downstream
Tssr96180	transcription start site region 96180	616 bp upstream
Tssr99755	transcription start site region 99755	1740 bp upstream
Tssr99756	transcription start site region 99756	1710 bp upstream
Tssr99757	transcription start site region 99757	1537 bp upstream
Tssr99758	transcription start site region 99758	1396 bp upstream
Tssr99759	transcription start site region 99759	1324 bp upstream
Tssr99760	transcription start site region 99760	1252 bp upstream
Tssr99761	transcription start site region 99761	1173 bp upstream
Tssr99762	transcription start site region 99762	1135 bp upstream
Tssr99763	transcription start site region 99763	1103 bp upstream
Tssr99764	transcription start site region 99764	168 bp downstream