rs225897724 SNP Detail

Summary

• ID
  rs225897724
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56428519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTTCTAA CCTGGTTTGT
  ATCCTGGGTC TACCCCTATC TCCCTAGTTG TCTGTTCAGA GGGAGAGTCA GTGGACTCGT
  GTTCACTCTG CAAAGCCCCA GCCACAATGC TTGGCTTTTC ACCAGCCCTT TTCTGCCATT
  CTCAGGAAGG CAGAAGCTTC CAGATTGGCC TTATCCTTTC TTCGTCCAGC TCTCATATGG
  S
  TTGTGTGGTC AGCACTGGGT GTTCAGGGAG AACTCAGGGT CCAGGTGAAC AGGAATTCTT
  CTGTACGCAT ATCTGGTCTC CACAACAGCC CTCAGAGGCC TGTCGGGGGC TTCCTGATTT
  GCAGTGGGTA TGACCAAAGC CTCAAGCCTG GGACCTGGGA CAGGGACCCT CTCCCATTCC
  TGCTCAGGGG GCCTCTGGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398551826	MGP_WTSI_17_56260942	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225897724					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398551826	MGP_WTSI_17_56260942	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56428519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9340	CpG island 9340	592 bp distal
Cpgi9341	CpG island 9341	1912 bp proximal
Gm56918	predicted gene, 56918	442 bp downstream
Lrg1	leucine-rich alpha-2-glycoprotein 1	within coordinates
Rr340022	regulatory region 340022	within coordinates
Sema6b	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	1566 bp downstream
Tssr5174	transcription start site region 5174	1304 bp downstream
Tssr5175	transcription start site region 5175	405 bp downstream
Tssr148750	transcription start site region 148750	1388 bp upstream
Tssr148751	transcription start site region 148751	1205 bp upstream
Tssr148752	transcription start site region 148752	1153 bp upstream
Tssr148753	transcription start site region 148753	899 bp upstream
Tssr148754	transcription start site region 148754	838 bp upstream
Tssr148755	transcription start site region 148755	701 bp upstream
Tssr148756	transcription start site region 148756	671 bp upstream
Tssr148757	transcription start site region 148757	491 bp upstream
Tssr148758	transcription start site region 148758	456 bp upstream
Tssr148759	transcription start site region 148759	378 bp downstream
Tssr148760	transcription start site region 148760	432 bp downstream
Tssr148761	transcription start site region 148761	446 bp downstream
Tssr148762	transcription start site region 148762	475 bp downstream