rs225898356 SNP Detail

Summary

• ID
  rs225898356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126625123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCCTTGG CGCACAGGGC
  GCAAATGTAG GGCCCCTTGC TCTTTGTCTT CTTCTCCAAG ACAGATGCAA CTGGGGCCAC
  GGCGACCGTC GAGGTTGGGG CGACGACAGC GGTGGCAGCC GCTGCTGCGA TAGTGGCGGC
  CGCGGCGGGG GGCGCGGCCT CGGCGGCTGG TGCGGAGACG GCAGGGGGTG GCGGAGGAGG
  Y
  GCCGGAGGCT GCTTCAGGGC CGCTGTGTCC ACTGTGGAGG CGGCGGCAGG GGCCGGGGGT
  GCAGTAACCA CTGCAGCGGC AGCCGCCGCA GCAGCCGCCG CCGCCGCGGC TGATTCCTGC
  GCGGCGGCGA GAACCGGGAG CAAGTCCACT TGGAGGGGCT CGGCCGCCGG GGCCTGGGGC
  GTGGGTGGGG GCGCCGGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373079247	MGP_WTSI_7_134169465	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225898356					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079247	MGP_WTSI_7_134169465	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126625123 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19727	CpG island 19727	within coordinates
Gm31749	predicted gene, 31749	within coordinates
Kif22	kinesin family member 22	1778 bp downstream
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)	within coordinates
Rr166710	regulatory region 166710	within coordinates
Rr368440	regulatory region 368440	1402 bp downstream
Rr370584	regulatory region 370584	1268 bp upstream
Tssr74905	transcription start site region 74905	1024 bp upstream
Tssr74906	transcription start site region 74906	816 bp upstream
Tssr74907	transcription start site region 74907	794 bp upstream
Tssr74908	transcription start site region 74908	387 bp upstream
Tssr74909	transcription start site region 74909	99 bp upstream
Tssr74910	transcription start site region 74910	62 bp upstream
Tssr74911	transcription start site region 74911	within coordinates
Tssr74912	transcription start site region 74912	183 bp downstream
Tssr74913	transcription start site region 74913	276 bp downstream
Tssr74914	transcription start site region 74914	297 bp downstream
Tssr74915	transcription start site region 74915	345 bp downstream
Tssr74916	transcription start site region 74916	382 bp downstream
Tssr74917	transcription start site region 74917	462 bp downstream
Tssr74918	transcription start site region 74918	512 bp downstream
Tssr74919	transcription start site region 74919	534 bp downstream
Tssr74920	transcription start site region 74920	573 bp downstream
Tssr74921	transcription start site region 74921	616 bp downstream
Tssr74922	transcription start site region 74922	676 bp downstream
Tssr74923	transcription start site region 74923	770 bp downstream
Tssr74924	transcription start site region 74924	845 bp downstream
Tssr74925	transcription start site region 74925	1031 bp downstream
Tssr74926	transcription start site region 74926	1076 bp downstream
Tssr74927	transcription start site region 74927	1195 bp downstream