rs225902288 SNP Detail

Summary

• ID
  rs225902288
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110951153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGAGACC TGACCCAAGG
  CACACTTTCA TCTCTCATGG AAAACTTGTT CACTGCCAGG GTCAAAGTGT CTGTGGGTAC
  CCAGGCAGCG GGTTGCTCAG TGAGGGCAGA GGTGGGGGTG GAGAAAGGAC TAGAAACTGA
  GGGCCGCTGC AGGCCAGCAG GCCTCAGGCC TCAGAAACTA AGAGGGGAGG GCTCTCAACA
  R
  AGGAGCCATG TGGCCCACCC TCTCTGCTCC CTGTGGCTGC CAAGGATAAA CTGCAGAGGG
  TTGAGCAGCC ACAGCTGCTG CAGCTGCTGA GGATGACAGC TGAGGGGTCA CATACTGCAT
  AGATCTTCTG CAGTACGTGA GGAGAGAGAC CCACGGTCCC CAGACTCTCA GGCTGAGCAC
  CTGGAAGCTG GAGTGGAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324159242	CHEV_12_112222929	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225902288					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110951153 () rs orientation: forward

Symbol	Name	Function Class
Gm48630	predicted gene, 48630	655 bp downstream
Gm51959	predicted gene, 51959	within coordinates
Gm60603	predicted gene, 60603	655 bp downstream
Tssr3954	transcription start site region 3954	686 bp upstream