rs225905527 SNP Detail

Summary

• ID
  rs225905527
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:155118018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCACTCT GGAAATCTAT
  GCTTTCTATG GTTGTTCCAG AATTCTTTGA AAGCCTGGGT GGGGGGTCTG GAGCAATGGT
  TCGACAATTA AGAGCCCTTG CTATTATTTC AGAGGACCTA AGCTTGATTC CCAGCAGTGC
  GATTAACTCC AGCCTAAGGA AATCCGATGC TATGTTCTGC ATCCGCGGGC ATACACTTAC
  W
  GACACATTAA AAATTTTAAA ACTCTGGGTG TTCCATCCTC TCCCCGCTCC ACCTTCCTTC
  TCGAATGCTA AACTCGATGA AGGTGCGGTG AACTACTCCG CAGCGTCGAG AGACTGGATG
  GAGGCGACAA ATGCCTGGCT TCTGAGTCTG TGGCGCCAAA GAGAGGAGCT TGCCATCGTG
  ACGTCACAGA ACTGTGACGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356211903	MGP_WTSI_2_155101834	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225905527					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356211903	MGP_WTSI_2_155101834	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155118018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12515	CpG island 12515	within coordinates
Gm75512	predicted gene, 75512	within coordinates
Map1lc3a	microtubule-associated protein 1 light chain 3 alpha	266 bp upstream
Tssr21073	transcription start site region 21073	241 bp upstream
Tssr21074	transcription start site region 21074	320 bp upstream
Tssr21075	transcription start site region 21075	382 bp upstream
Tssr21076	transcription start site region 21076	405 bp upstream
Tssr21077	transcription start site region 21077	484 bp upstream
Tssr21078	transcription start site region 21078	498 bp upstream
Tssr21079	transcription start site region 21079	521 bp upstream
Tssr21080	transcription start site region 21080	619 bp upstream
Tssr21081	transcription start site region 21081	792 bp upstream
Tssr21082	transcription start site region 21082	818 bp upstream
Tssr21083	transcription start site region 21083	834 bp upstream
Tssr21084	transcription start site region 21084	865 bp upstream
Tssr21085	transcription start site region 21085	982 bp upstream