rs225909304 SNP Detail

Summary

• ID
  rs225909304
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:159549327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aTAGCTGCA AAGCCAGCTG ACATTTTTTC
  CCCAAAAGTA TCTTAGATAA AAAACCGGAA AACTTTTATT TTTTGTTTTT TCTACCTACA
  TTTTTCCCTA ACATCTTTAT ATCTCAGAGA CGAAACCACA GACACCTCGT CTCCACCAAG
  S
  TCCCAGCCGT TGTCACCAGA ACTCCCAGAG TGGAAGCAGA GCGATTCAGA GCCTTAGCCG
  CTGTTTACCC CACTTCGAGA AGCTCCACTA TACTTTACCA GGAGCGGCCC GCAGCAGCCC
  CTTCGAGGAC AAGCTGATCC CCTGAACTTC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325989952	CHEV_X_157204263	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225909304					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:159549327 () rs orientation: forward

Symbol	Name	Function Class
n-TVtac3	nuclear encoded tRNA valine 3 (anticodon TAC)	149 bp downstream
Rr694784	regulatory region 694784	within coordinates
Rs1	retinoschisis (X-linked, juvenile) 1 (human)	Intron
Tssr162562	transcription start site region 162562	1778 bp upstream
Tssr162563	transcription start site region 162563	1795 bp upstream
Tssr162564	transcription start site region 162564	1806 bp upstream
Tssr162565	transcription start site region 162565	1848 bp upstream