rs225909819 SNP Detail

Summary

• ID
  rs225909819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58626643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGCAAGT CAACATTTCC
  CCAGTGCTAG ATAGAACAAG CCATCGTTAG TGAAGGTTGA TCATCACCAA ACTTTTGAGT
  TCACTTCTGA CATAGGCAGA TAGCATTTAA ATTTTCCATA ATTATGTGTT CATTCATGGT
  TGAATCCTTT TTTTTTTCTG TTCTTAAACG GACAGTTCTA AAGGTGAAAT AATTTCCTGT
  Y
  GTTGAGCCCT CAGTGCAGTA GAACTCGCTC ATTCTGTGGA AGAGGAGAGA ACCAGTTGGA
  TTAGGTTGCC CTCTGACCTC TGCATGAACA TCCACACACA CACACACACC ACACATGACT
  TTAAAGAAAT ACTCTTAAAA ATAGGAGCCC AGCATGATGC ACAGGCTTGT ACTCCTGGCA
  GTTGGGAGAC AGAGACAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349770166	MGP_WTSI_1_58644328	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225909819					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349770166	MGP_WTSI_1_58644328	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58626643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi281	CpG island 281	687 bp distal
Hycc2	hyccin PI4KA lipid kinase complex subunit 2	1161 bp upstream
Ndufb3	NADH:ubiquinone oxidoreductase subunit B3	Intron
Rr411457	regulatory region 411457	1304 bp distal
Rr411458	regulatory region 411458	1090 bp distal
Rr411459	regulatory region 411459	1265 bp distal
Rr411460	regulatory region 411460	460 bp distal
Tssr93	transcription start site region 93	843 bp downstream
Tssr6781	transcription start site region 6781	1083 bp downstream
Tssr6782	transcription start site region 6782	1038 bp downstream
Tssr6783	transcription start site region 6783	859 bp downstream
Tssr11786	transcription start site region 11786	1166 bp upstream