rs225911897 SNP Detail

Summary

• ID
  rs225911897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:49024638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGAAAGA ACCAGCACCC
  AGTGTTCTGG GTTAGGGTGA GGCTCATCTG GACTCCAGCA GAGCTTAGCT ATTTACTTCT
  GTGCTGTGCT GGCCCACGTG TTGGCAGCTG GGAGACGCTA AGGCTTACCT ATGAGGAGGT
  CTAGTTTTAG TCTTCAGGCA GAGGGCGTCT CTGCAGCACT CCCTCACAGG CGAGCCACCT
  R
  TTTTCTTTTC TTCTTGTGTT GTATCTTCTA GATCAGATCC CTGTATTCGT GACCATGTCC
  CAGAAGAATG ACAGGAACTT GTCTGATGAG ATCTTCCTCA GAGACCTCCC CATCGTCTTC
  GATGTCCTCA TTCATGATCC CAGCCACTTC CTCAACGACT CTGCCATTTC CTACAAGTGG
  AACTTTGGGG ACAACACTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368235225	MGP_WTSI_6_48997703	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225911897					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368235225	MGP_WTSI_6_48997703	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49024638 () rs orientation: forward

Symbol	Name	Function Class
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	Intron
Tssr56328	transcription start site region 56328	1946 bp downstream
Tssr56329	transcription start site region 56329	1870 bp downstream
Tssr56330	transcription start site region 56330	1699 bp downstream
Tssr56331	transcription start site region 56331	1654 bp downstream
Tssr56332	transcription start site region 56332	1581 bp downstream
Tssr56333	transcription start site region 56333	1543 bp downstream
Tssr56334	transcription start site region 56334	1533 bp downstream
Tssr56335	transcription start site region 56335	1513 bp downstream
Tssr56336	transcription start site region 56336	1486 bp downstream
Tssr56337	transcription start site region 56337	1463 bp downstream
Tssr56338	transcription start site region 56338	1447 bp downstream
Tssr56339	transcription start site region 56339	1433 bp downstream
Tssr56340	transcription start site region 56340	1243 bp downstream
Tssr56341	transcription start site region 56341	983 bp downstream
Tssr56342	transcription start site region 56342	951 bp downstream
Tssr56343	transcription start site region 56343	405 bp downstream
Tssr56344	transcription start site region 56344	381 bp downstream
Tssr56345	transcription start site region 56345	362 bp downstream
Tssr56346	transcription start site region 56346	309 bp downstream
Tssr56347	transcription start site region 56347	291 bp downstream
Tssr56348	transcription start site region 56348	268 bp downstream
Tssr56349	transcription start site region 56349	44 bp upstream
Tssr56350	transcription start site region 56350	71 bp upstream
Tssr56351	transcription start site region 56351	101 bp upstream
Tssr56352	transcription start site region 56352	114 bp upstream
Tssr56353	transcription start site region 56353	183 bp upstream
Tssr56354	transcription start site region 56354	198 bp upstream
Tssr56355	transcription start site region 56355	223 bp upstream
Tssr56356	transcription start site region 56356	241 bp upstream
Tssr56357	transcription start site region 56357	253 bp upstream
Tssr56358	transcription start site region 56358	271 bp upstream
Tssr56359	transcription start site region 56359	286 bp upstream
Tssr56360	transcription start site region 56360	323 bp upstream
Tssr60848	transcription start site region 60848	1296 bp upstream
Tssr60849	transcription start site region 60849	342 bp upstream
Tssr60850	transcription start site region 60850	289 bp upstream
Tssr60851	transcription start site region 60851	150 bp downstream
Tssr60852	transcription start site region 60852	193 bp downstream
Tssr60853	transcription start site region 60853	203 bp downstream
Tssr60854	transcription start site region 60854	222 bp downstream
Tssr60855	transcription start site region 60855	255 bp downstream
Tssr60856	transcription start site region 60856	293 bp downstream
Tssr60857	transcription start site region 60857	322 bp downstream