rs225921489 SNP Detail

Summary

• ID
  rs225921489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25147230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACGTACG AGGTTTGGAA
  TCTTTCAGCA CCCTTCCTAG ATGCAGCCAC ATTTTGAAAA AGTTTAGAGC TCTTGACTCC
  AATGCTTTAA TTCTGAATTC TTGTTTTGCT GAAGACTACC ATATATTAGT CGTGTATTAA
  AGGAAAAAAA ATATTTATGT TAAGCCCAAG AAAGGGTTTT TGGTCTGAAT CCCCCACATC
  Y
  TCTGAATGCA ATAAAGAGGA AGAATGCAGA ATCCAGGCAA AGCTCTGTGT GGAGAAACAG
  TATTTTCCCT TCAATTAATG ATTAATTCCT CAGCTGGTGG GCCAGGCGGT CTCTGACCTC
  CACGTGACAG CCATGTGCCC CAGGGCTTCT CTCTAAGGAG GCAGAGTCCG GTGATGTAGA
  GGCGGTAAAA TCCGTCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385325264	MGP_WTSI_12_25782096	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225921489					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385325264	MGP_WTSI_12_25782096	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25147230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	470 bp distal
Cpgi4501	CpG island 4501	1100 bp proximal
Gm59395	predicted gene, 59395	within coordinates
Gm59396	predicted gene, 59396	1986 bp downstream
Id2	inhibitor of DNA binding 2	1139 bp upstream
Rr403250	regulatory region 403250	868 bp downstream
Rr463954	regulatory region 463954	761 bp distal
Rr463955	regulatory region 463955	102 bp distal
Rr463956	regulatory region 463956	within coordinates
Rr463957	regulatory region 463957	912 bp proximal
Tssr112979	transcription start site region 112979	1492 bp downstream
Tssr112980	transcription start site region 112980	782 bp downstream
Tssr112981	transcription start site region 112981	744 bp downstream
Tssr112982	transcription start site region 112982	197 bp upstream
Tssr112983	transcription start site region 112983	1766 bp upstream
Tssr115884	transcription start site region 115884	1438 bp upstream
Tssr115885	transcription start site region 115885	1135 bp upstream
Tssr115886	transcription start site region 115886	8 bp downstream