rs225923761 SNP Detail

Summary

• ID
  rs225923761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106340189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC CCTCCCTCCC TCCCTCTGTA
  Y
  CTCTCCTGTC CTTCCCTCAA ACACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss642380790	FVB_NJ_9_106365321	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225923761					SNP	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss642380790	FVB_NJ_9_106365321	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106340189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22267	CpG island 22267	344 bp distal
Cpgi22268	CpG island 22268	1496 bp proximal
Gpr62	G protein-coupled receptor 62	972 bp downstream
Pcbp4	poly(rC) binding protein 4	within coordinates
Tssr86914	transcription start site region 86914	1095 bp downstream
Tssr86915	transcription start site region 86915	163 bp upstream
Tssr86916	transcription start site region 86916	267 bp upstream
Tssr86917	transcription start site region 86917	390 bp upstream
Tssr86918	transcription start site region 86918	523 bp upstream
Tssr86919	transcription start site region 86919	793 bp upstream
Tssr91318	transcription start site region 91318	1895 bp downstream
Tssr91319	transcription start site region 91319	1912 bp downstream