rs225935741 SNP Detail

Summary

• ID
  rs225935741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99243280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCATTGCT CTAGATGCTC
  ACAGTGCTCT GCTTGCCCGG TAAGACTGTC TTCCCCTGAT AGAGCCGTCA ACTTGCAGGC
  TTACCATCGT ATTTCATGAG ATCTCCCCCT CCCATCTTTC GCCTCTGTTC ATGTTCTTTG
  CATTGGCTTC TTTTTTGTTT TTAAAAATTT AAAATGCAAG ATCTTGCATT TTCCGGGGAC
  Y
  ATGGACATCA CTTTCGGTTG AGAAGATTTG AAACAAAGAA GCTAAGAATA TAAAATTTCA
  TAACCTAGTA GGTAAGCTTG CAGAAAAGGA AGCCAGAAAA TTTGAATCAA GAAACAATAT
  CCAGAGGCTG AAGAGGTGCC TCGGCAGTTA ACAGCACTTG CTGCTCTTCC AGAGGACCAG
  AGTTCAAATT CCAGCACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323828354	CHEV_11_99213768	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225935741					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99243280 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3794	CpG island 3794	1330 bp distal
Krt27	keratin 27	1350 bp upstream
Tssr110650	transcription start site region 110650	1341 bp upstream