rs225937196 SNP Detail

Summary

• ID
  rs225937196
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78522677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAGGGGT AGGCACCCTT
  TTTTAAATTA GAGAAACCGT AACATTTTCT TAGGGAGTTA AGTAAACATC AACTTTTATC
  TTAAAAAAAA AAGTCCCCCC CCCCGCTTTT TCATACATAT ACAGAAACTA CCAATATATA
  CCTACCGATG TGTGAATGTG CATGTGTGTG TGTGTGTGTG TGTGTGTGTG TAGGCACGCG
  R
  ACGCTTGCCA TTTTCCTAAA CTTCTGACTC ATCGTCTGGA GGACAATGAT TGACTTTTCC
  TCAGTTCACA TAGCTGCCCT GGATGCCGCT CACAAGGATG GGCCTGCTTA TTCACTCCGG
  GCATCCCTGG TAGAGCGCTA GAGTAAACAA ACCCCAGGTT CCCGGTGGCG GGGGAAATGG
  GCTCCCTATG TTCTCCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378161654	MGP_WTSI_9_78463202	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225937196					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378161654	MGP_WTSI_9_78463202	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78522677 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	151 bp upstream
Cpgi22073	CpG island 22073	100 bp proximal
Gm69315	predicted gene, 69315	within coordinates
Rr683597	regulatory region 683597	799 bp distal
Rr683598	regulatory region 683598	within coordinates
Rr683599	regulatory region 683599	249 bp proximal
Tssr86295	transcription start site region 86295	57 bp upstream
Tssr86296	transcription start site region 86296	87 bp upstream
Tssr86297	transcription start site region 86297	106 bp upstream
Tssr86298	transcription start site region 86298	343 bp upstream
Tssr86299	transcription start site region 86299	362 bp upstream
Tssr86300	transcription start site region 86300	409 bp upstream
Tssr86301	transcription start site region 86301	426 bp upstream
Tssr86302	transcription start site region 86302	442 bp upstream
Tssr90659	transcription start site region 90659	250 bp downstream