rs225938438 SNP Detail

Summary

• ID
  rs225938438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACA TTTTCAAATG GCTATGTCTC
  Y
  TATCAGCTAT TAGCATGTTA TATAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315572	MGP_WTSI_2_113875638	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225938438					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315572	MGP_WTSI_2_113875638	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880383 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	575 bp downstream
Tssr19433	transcription start site region 19433	1738 bp downstream
Tssr19434	transcription start site region 19434	1694 bp downstream
Tssr19435	transcription start site region 19435	724 bp downstream
Tssr19436	transcription start site region 19436	320 bp downstream
Tssr19437	transcription start site region 19437	383 bp upstream
Tssr19438	transcription start site region 19438	466 bp upstream
Tssr19439	transcription start site region 19439	531 bp upstream
Tssr25666	transcription start site region 25666	1731 bp upstream
Tssr25667	transcription start site region 25667	1688 bp upstream
Tssr25668	transcription start site region 25668	1661 bp upstream
Tssr25669	transcription start site region 25669	1598 bp upstream
Tssr25670	transcription start site region 25670	660 bp upstream
Tssr25671	transcription start site region 25671	597 bp upstream
Tssr25672	transcription start site region 25672	580 bp upstream
Tssr25673	transcription start site region 25673	549 bp upstream
Tssr25674	transcription start site region 25674	303 bp upstream
Tssr25675	transcription start site region 25675	271 bp upstream
Tssr25676	transcription start site region 25676	248 bp upstream
Tssr25677	transcription start site region 25677	223 bp upstream
Tssr25678	transcription start site region 25678	434 bp downstream
Tssr25679	transcription start site region 25679	443 bp downstream
Tssr25680	transcription start site region 25680	456 bp downstream
Tssr25681	transcription start site region 25681	503 bp downstream
Tssr25682	transcription start site region 25682	585 bp downstream
Tssr25683	transcription start site region 25683	592 bp downstream
Tssr25684	transcription start site region 25684	683 bp downstream
Tssr25685	transcription start site region 25685	1053 bp downstream
Tssr25686	transcription start site region 25686	1396 bp downstream