rs225946744 SNP Detail

Summary

• ID
  rs225946744
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78795787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGGG AGTTTCTGGA TTCTTTATCC
  G
  GTGTTTTGAG GGCCGCCAGA CGGAG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324106627	CHEV_12_79850000	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225946744					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78795787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4794	CpG island 4794	within coordinates
Gm60106	predicted gene, 60106	within coordinates
Pals1	protein associated with LIN7 1, MAGUK family member	within coordinates
Rr403364	regulatory region 403364	157 bp downstream
Rr468462	regulatory region 468462	11 bp distal
Rr468463	regulatory region 468463	within coordinates
Rr468464	regulatory region 468464	557 bp proximal
Tssr114060	transcription start site region 114060	93 bp downstream
Tssr114061	transcription start site region 114061	42 bp downstream
Tssr114062	transcription start site region 114062	within coordinates
Tssr114063	transcription start site region 114063	14 bp upstream
Tssr116791	transcription start site region 116791	576 bp downstream