rs225947497 SNP Detail

Summary

• ID
  rs225947497
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:53334515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTACATC CTCTGATCTA
  GTGTACCTCC TATCAATTTC TGGATTCCAG GGTCTTATTT ATCTTCCTTC TAAATATCAT
  ACTTAGATGA CCTAAAAGAC AAGATAAATA TTATTCTATC TCAGAATCGC TTTTTCTCTA
  TGATTTGCTT GGTAATAAAA TTAATAGCCA ACATAGGAAC TTCATGTACT ATCTTTTATA
  W
  TCCTCTACAC ACATTACACA TCTATTACAA TGGAATGGAA AATCTTGTTA ACTTGCAGAA
  GATTACCATA TTTCTAAGAC ATATGCATAT TTTGGCTCAG AAGGCCACAC CTCAATACTT
  TCCAAGCAAG CAAGTTAGAA ATCTCAACAA TACTGTAAGA ATTCCCACCA TATACATGGC
  ACCTGCTCCT TCCTGAGTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349656103	MGP_WTSI_1_53352200	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225947497					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349656103	MGP_WTSI_1_53352200	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:53334515 () rs orientation: forward

Symbol	Name	Function Class
Cpgi250	CpG island 250	1264 bp proximal
Gm28778	predicted gene 28778	1755 bp upstream
Ormdl1	ORM1-like 1 (S. cerevisiae)	1739 bp upstream
Pms1	PMS1 homolog 1, mismatch repair system component	within coordinates
Rr410945	regulatory region 410945	990 bp proximal
Rr410946	regulatory region 410946	1393 bp proximal
Rr410947	regulatory region 410947	1652 bp proximal
Rr410948	regulatory region 410948	1766 bp proximal
Tssr6687	transcription start site region 6687	1714 bp upstream
Tssr6688	transcription start site region 6688	1740 bp upstream
Tssr6689	transcription start site region 6689	1791 bp upstream
Tssr11646	transcription start site region 11646	1602 bp downstream
Tssr11647	transcription start site region 11647	1645 bp downstream