TTGGACCTCC TCCTGGCCGA AGAAGAAGGC CCAAAACAGG GCCTTTCTCA GAAGCTGTGT TGCTTTGGCA GTTCCCAGAA GCTGTCAGCT TCTGTGGTGC AGACTCTCAC CTGTGCAGAC TAAATTCCTA AGTTCCAGGG AGTCCCGGAA TCAAGATGGC GACCGCTGCT GCTGAGGCTG AGGCCGCCTC CCAAGCCAGG Y GGTCACCTGT CCTCTGGTCC GGACGGTGGC CGGCTGTCTG CGGCCCGCCA AGGGTGCTGC CTCAGCGGCT CTGTGCTTCT GCCTGTCCCA GAAGCTGTCC GGTTCTCTGG CGCACCCTCT CACCAGTTCA GACTAATTTC CTAAGTTCTG CTGAGTCCTG GAACCAAGAT GGCGACCGCT GCTGCTGAGG CTGAGCTGAA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C58/J |
CAST/EiJ |
CBA/J |
CZECHII/EiJ |
DBA/2J |
JF1/MsJ |
MOLF/EiJ |
NON/ShiLtJ |
NZO/HlLtJ |
PL/J |
PWK/PhJ |
SEA/GnJ |
SJL/J |
SM/J |
ST/bJ |
SWR/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss367324089 | MGP_WTSI_6_8494288 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | T | C | C | C | C | C | C | C | C |
SNP Consensus Information | |||||||||||||||||||||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C58/J |
CAST/EiJ |
CBA/J |
CZECHII/EiJ |
DBA/2J |
JF1/MsJ |
MOLF/EiJ |
NON/ShiLtJ |
NZO/HlLtJ |
PL/J |
PWK/PhJ |
SEA/GnJ |
SJL/J |
SM/J |
ST/bJ |
SWR/J |
WSB/EiJ |
||||
rs225947524 | SNP | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | T | C | C | C | C | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss367324089 | MGP_WTSI_6_8494288 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr6:8544288 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Glcci1 | glucocorticoid induced transcript 1 | within coordinates | ||||||
Gm45062 | predicted gene 45062 | within coordinates | ||||||
Tssr54920 | transcription start site region 54920 | 285 bp upstream | ||||||
Tssr54921 | transcription start site region 54921 | 1037 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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