rs225947746 SNP Detail

Summary

• ID
  rs225947746
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11210148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTACGTC ACTTCCTGCC
  TCCAGCTTCC TGTTCTGCTT GACGTCCTGC CTGAACTTCC CTCAGGGGCC ATGGTTGGGA
  CATAGAATCC AGATAAAGCC TTTCCTCGCC AAATGGCTTT TGCTCAGTGT TTTCTTGTAG
  CAATATAGGA ATAGAAAGCA AACTCGGACA GCCATGAACT TGTTATTCTC CTGCCTCAGC
  W
  ACCCATGCTC TCTCTTAGCC ATGGCTATGG CCCTGAGCCC TCTGGCCTGC TAGAAATTAC
  TTTGTTCCAC TTGATGGAAA CCCTCTAACA TGTGACCTGG AATGTGTATT GTTCATATTC
  ATAGATTCCT GATGTCCCTA GTGCATTCCT GAGAATACCC AAAGAAGCTA TGAAATAGAT
  AACTAAGAGC TTAGACTTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353089134	MGP_WTSI_2_11126964	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A	T	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225947746					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A	T	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353089134	MGP_WTSI_2_11126964	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11210148 () rs orientation: forward

Symbol	Name	Function Class
Prkcq	protein kinase C, theta	within coordinates
Rr45715	regulatory region 45715	853 bp proximal
Rr45716	regulatory region 45716	1253 bp proximal
Rr51202	regulatory region 51202	223 bp proximal
Rr57623	regulatory region 57623	149 bp distal
Rr367104	regulatory region 367104	723 bp downstream
Tssr16111	transcription start site region 16111	688 bp upstream
Tssr16112	transcription start site region 16112	772 bp upstream