rs225948694 SNP Detail

Summary

• ID
  rs225948694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:83572274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCTGGGA ACTGAACTCA
  GGTCATCTGC TAGAGCAGTG TGTGCTCTCT CTTTAAACTG CCATATCTCT ACTCCTTGTT
  GGGTTCTTTT GAAAGTCTAG GCAGCCTAGG CTGGTCTTGC AATAGTGACC TCACTTCCTG
  ACCCTTCCAA AACTGGGGAC CATTAGTTGC TACCTCAGTG AGAGCGTTTT AGAATGCTGG
  R
  GTCAGGGGAT GTGAAGACAT GGAGTGGGTA TGTAGATCGC TCTGCTGGAA TGTTCCTGCG
  CCTTGGGATT CCAGGGGGAG CCCCTGTGAC TCCCCTGGCG GGCTTTCAGA GAGCAGAGAT
  GAGAGGAAGC CTTTAAACAT AAACTAGACA TCTGTGATGT CCCCAAGGAT GAGGTGGACA
  TCTGGGGGGG AGGGGGGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324113669	CHEV_12_84866450	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225948694					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:83572274 () rs orientation: forward

Symbol	Name	Function Class
Dcaf4	DDB1 and CUL4 associated factor 4	within coordinates
Rr257993	regulatory region 257993	874 bp distal
Rr261746	regulatory region 261746	1727 bp proximal
Rr265648	regulatory region 265648	526 bp proximal
Rr387528	regulatory region 387528	1425 bp upstream
Tssr114259	transcription start site region 114259	543 bp upstream