rs225956640 SNP Detail

Summary

• ID
  rs225956640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95392749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGGTCA CGGGTCTGAA
  AGGAGGAGTG GCATCATGAG GTACCCCTTC ATTCACCTGC TCCCCCAGAA AGGGAAGGAG
  GGGAAAAACT ACTGGAGAAA AAGGAAGCTG ACTTACAGTA AAGGTCTGGT GTAAGGACAA
  CCAGAACTGG GCCCTCCCAT AGTTCTGAAG AATGTCTAGT AAGACCTTTA CTACTTGCTA
  R
  GTAAATCTGG GGCAATCATT CAGCAAAATG GCAAAAATTT AAAAATTAAC AAATAAATAA
  ACGTCAGCCT TATTAGAAAG AGAGCAAGTT TGGTTTGTTT CTCAAACCAA ACAGCAAATG
  CAAACAGATA ATCATACACT TTACGTTCCG AGACTCTTTA AATGTTATCC AACTCCTTAT
  CTCTGCATCT CAAGCCTCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323100830	CHEV_9_95411115	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225956640					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95392749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22151	CpG island 22151	563 bp proximal
Gm28424	predicted gene 28424	556 bp upstream
Rr206888	regulatory region 206888	within coordinates
Rr383784	regulatory region 383784	705 bp upstream
Tssr86548	transcription start site region 86548	571 bp upstream
Tssr90919	transcription start site region 90919	1161 bp downstream
Tssr90920	transcription start site region 90920	1201 bp downstream
U2surp	U2 snRNP-associated SURP domain containing	within coordinates