rs225960673 SNP Detail

Summary

• ID
  rs225960673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13088473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGCAGCT CCCAGGCCTG
  TTCCCCCCTC CCCAAAAAGG CTTATTTTAG CTAGCCCAGA GCAGGCTCTG CTCGTGCAGA
  GCTGGCCTTG CTCCAGTACA AGGAGAAGCC TCAGCAACAC TGGGCACCTC GCATGTACTG
  GGGCCTTAAT GAGGAAAACA TCTCTGGGAA ACCTGCTACC ACTCAGTCGA TGGGTCGATG
  Y
  CAGTAAGCCA CTGGCAAGGT CAGCCCCACA GAGACAGCCA CATGTTTGAG GGCAGCAACA
  TGTGGGAACT GGACAAAGGC CTCCAGTAAC AAAGCACACA GCCGACAGTG AGCAGCAGGA
  CCCTCCCACC CCTCGAGTCA GGACAGTTGG AGTCCTTGCT GGGTTCCGTG GACAGTGTTC
  ACCATGTTAT AACACTTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373736729	MGP_WTSI_8_13038473	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225960673					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373736729	MGP_WTSI_8_13038473	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13088473 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	1141 bp distal
Rr659844	regulatory region 659844	625 bp distal
Rr659845	regulatory region 659845	within coordinates
Tssr76325	transcription start site region 76325	1170 bp downstream
Tssr76326	transcription start site region 76326	1121 bp downstream
Tssr76327	transcription start site region 76327	1111 bp downstream
Tssr76328	transcription start site region 76328	1083 bp downstream
Tssr76329	transcription start site region 76329	635 bp downstream
Tssr76330	transcription start site region 76330	488 bp downstream
Tssr76331	transcription start site region 76331	830 bp upstream
Tssr76332	transcription start site region 76332	853 bp upstream
Tssr76333	transcription start site region 76333	885 bp upstream
Tssr76334	transcription start site region 76334	896 bp upstream
Tssr76335	transcription start site region 76335	1064 bp upstream